The 2.0 version of rSNPBase

Variant report

Variant rs6686860
Chromosome Location chr1:186887137-186887138
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186854000-186897200 Weak transcription Lung lung
2 chr1:186864600-186897000 Weak transcription Esophagus oesophagus
3 chr1:186868800-186897000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:186869000-186896600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:186871400-186904000 Weak transcription Hela-S3 cervix
6 chr1:186873800-186896800 Weak transcription Small Intestine intestine
7 chr1:186878600-186895000 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:186878800-186888600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:186879200-186888400 Weak transcription Spleen Spleen
10 chr1:186880000-186888800 Strong transcription Primary monocytes fromperipheralblood blood
11 chr1:186880400-186891600 Weak transcription Aorta Aorta
12 chr1:186881600-186891400 Weak transcription Fetal Intestine Large intestine
13 chr1:186881600-186894600 Weak transcription Stomach Smooth Muscle stomach
14 chr1:186881600-186895000 Weak transcription Primary hematopoietic stem cells blood
15 chr1:186881800-186894600 Weak transcription Colon Smooth Muscle Colon
16 chr1:186881800-186894800 Weak transcription Adipose Nuclei Adipose
17 chr1:186881800-186894800 Weak transcription Rectal Smooth Muscle rectum
18 chr1:186881800-186896800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:186881800-186933600 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:186881800-186951200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:186882800-186888800 Strong transcription Primary neutrophils fromperipheralblood blood
22 chr1:186882800-186889200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:186883000-186889400 Strong transcription Monocytes-CD14+_RO01746 blood
24 chr1:186883200-186887200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:186883200-186891000 Weak transcription A549 lung
26 chr1:186883800-186890600 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:186883800-186906800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:186884800-186894600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:186885000-186887200 Enhancers HUVEC blood vessel
30 chr1:186885400-186888600 Strong transcription Duodenum Mucosa Duodenum
31 chr1:186885800-186889400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:186886000-186889800 Strong transcription Primary hematopoietic stem cells short term culture blood
33 chr1:186886000-186892000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:186886800-186887200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:186886800-186887600 Strong transcription Fetal Intestine Small intestine
36 chr1:186887000-186887200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr1:186887000-186889400 Strong transcription Fetal Stomach stomach
38 chr1:186887000-186890000 Weak transcription Ovary ovary

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Last update: Aug 31, 2015