Variant report

Variant	rs6686863
Chromosome Location	chr1:93494195-93494196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10874754	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164862	0.98[EUR][1000 genomes]
rs11164865	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11590314	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12084977	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12091867	0.99[EUR][1000 genomes]
rs12092136	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12094815	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2485031	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2785601	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs491699	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs569268	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59284207	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61523335	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6657919	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6688632	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74103530	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7536849	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93488000-93504200	Enhancers	Fetal Thymus	thymus
2	chr1:93492000-93494800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:93492400-93497600	Enhancers	Thymus	Thymus
4	chr1:93493200-93495000	Enhancers	Primary T cells from cord blood	blood
5	chr1:93493600-93496000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:93493600-93496800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:93493800-93495800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:93493800-93495800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:93493800-93496200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:93494000-93494800	Flanking Active TSS	Dnd41	blood
11	chr1:93494000-93495600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:93494000-93495800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:93494000-93496200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:93494000-93496200	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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