Variant report

Variant	rs6687273
Chromosome Location	chr1:192117602-192117603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10754003	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10801099	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10801100	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10921092	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921097	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10921099	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10921100	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10921107	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11581394	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1175170	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1175171	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12034983	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037701	0.88[ASN][1000 genomes]
rs12117018	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12138354	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1937235	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2247566	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2247567	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077238	0.81[AFR][1000 genomes]
rs4077239	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128880	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495675	0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4540639	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4618947	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7526348	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192116400-192117800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:192116400-192121800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:192116600-192118200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:192116800-192117800	Enhancers	NHEK	skin
5	chr1:192116800-192118000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:192116800-192118000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:192116800-192118000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:192117400-192117800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:192117400-192121800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:192117600-192120400	Weak transcription	Dnd41	blood
11	chr1:192117600-192122200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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