Variant report

Variant	rs6687903
Chromosome Location	chr1:103578176-103578177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11581384	0.88[AFR][1000 genomes]
rs11583146	0.88[AFR][1000 genomes]
rs11588054	0.88[AFR][1000 genomes]
rs11588072	0.88[AFR][1000 genomes]
rs11589450	0.88[AFR][1000 genomes]
rs4497232	0.88[AFR][1000 genomes]
rs61660832	0.88[AFR][1000 genomes]
rs6577357	0.88[AFR][1000 genomes]
rs6671691	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675533	0.88[AFR][1000 genomes]
rs6679075	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830893	chr1:103458498-103635579	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103574600-103578400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:103575200-103578200	Enhancers	Hela-S3	cervix
3	chr1:103575200-103578400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:103575200-103578600	Enhancers	HSMM	muscle
5	chr1:103575200-103579600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:103575800-103578600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:103575800-103578600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:103576200-103578400	Enhancers	HMEC	breast
9	chr1:103577200-103578400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:103577200-103579200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:103577400-103578400	Enhancers	HUVEC	blood vessel
12	chr1:103577600-103578200	Enhancers	NH-A	brain
13	chr1:103577600-103578600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:103577600-103578600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:103577600-103578600	Enhancers	Osteobl	bone
16	chr1:103577800-103578200	Enhancers	A549	lung
17	chr1:103577800-103578400	Enhancers	HSMMtube	muscle
18	chr1:103578000-103578200	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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