Variant report

Variant	rs6687908
Chromosome Location	chr1:57046653-57046654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11206845	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12058459	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12058536	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12059747	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12059843	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12070247	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12070557	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12090895	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12098117	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17114119	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17114125	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953114	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28365912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6702052	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72903425	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57045400-57046800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:57045400-57048200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:57045400-57050800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:57045400-57051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:57045600-57047800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:57045600-57047800	Weak transcription	Psoas Muscle	Psoas
7	chr1:57045600-57048000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:57045600-57048000	Enhancers	Placenta	Placenta
9	chr1:57045800-57047400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:57045800-57047400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:57045800-57048000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:57045800-57048000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:57045800-57048000	Enhancers	Liver	Liver
14	chr1:57045800-57048200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:57046000-57046800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:57046000-57046800	Enhancers	Left Ventricle	heart
17	chr1:57046000-57047000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:57046000-57047000	Weak transcription	HSMMtube	muscle
19	chr1:57046000-57047400	Weak transcription	Ovary	ovary
20	chr1:57046000-57047600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:57046000-57047600	Enhancers	HepG2	liver
22	chr1:57046000-57047600	Enhancers	NHDF-Ad	bronchial
23	chr1:57046000-57047800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:57046000-57047800	Weak transcription	Right Atrium	heart
25	chr1:57046000-57048200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr1:57046000-57049000	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:57046000-57050200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:57046000-57050200	Weak transcription	Brain Angular Gyrus	brain
29	chr1:57046000-57050200	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:57046000-57050400	Weak transcription	HSMM	muscle
31	chr1:57046000-57050800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:57046200-57047400	Weak transcription	Fetal Thymus	thymus
33	chr1:57046200-57047600	Enhancers	Fetal Lung	lung
34	chr1:57046200-57048000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:57046200-57048000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr1:57046200-57050200	Weak transcription	Brain Substantia Nigra	brain
37	chr1:57046200-57050400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr1:57046200-57050400	Weak transcription	A549	lung
39	chr1:57046200-57051400	Weak transcription	Osteobl	bone
40	chr1:57046400-57047400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:57046400-57050200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:57046600-57047000	Weak transcription	NHLF	lung
43	chr1:57046600-57047600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr1:57046600-57047800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr1:57046600-57047800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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