Variant report

Variant	rs6688358
Chromosome Location	chr1:186868124-186868125
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10911972	0.85[ASN][1000 genomes]
rs12720530	0.83[EUR][1000 genomes]
rs2891261	0.85[ASN][1000 genomes]
rs4276871	0.85[ASN][1000 genomes]
rs5027750	0.85[ASN][1000 genomes]
rs59300656	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60979573	1.00[ASN][1000 genomes]
rs61208933	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6675166	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6675898	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6678709	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66896520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6697116	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6698103	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67334743	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67896462	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72641703	1.00[ASN][1000 genomes]
rs72709853	0.81[EUR][1000 genomes]
rs7526761	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186839200-186884800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:186854000-186869400	Weak transcription	Pancreas	Pancrea
3	chr1:186854000-186897200	Weak transcription	Lung	lung
4	chr1:186854400-186880000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:186861600-186873000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:186862200-186872400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:186863400-186872000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr1:186864600-186870000	Weak transcription	Hela-S3	cervix
9	chr1:186864600-186897000	Weak transcription	Esophagus	oesophagus
10	chr1:186866200-186868400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:186866200-186880800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:186866200-186881000	Weak transcription	Adipose Nuclei	Adipose
13	chr1:186866200-186883200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:186866200-186885000	Weak transcription	HUVEC	blood vessel
15	chr1:186866400-186868200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:186866400-186868200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:186866400-186868400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:186866400-186868400	Weak transcription	NHEK	skin
19	chr1:186866400-186869000	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:186866400-186870200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:186866400-186871200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:186866400-186874800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:186866400-186880200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:186866400-186880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr1:186866400-186883000	Weak transcription	A549	lung
26	chr1:186867000-186871600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr1:186867800-186869200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:186868000-186868800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr1:186868000-186869200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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