Variant report

Variant	rs6688377
Chromosome Location	chr1:221617407-221617408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1031674	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11118738	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11118740	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs12029151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12030169	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12032381	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12038764	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12039408	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12041783	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12046746	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17010060	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17010123	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903138	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903139	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34525999	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35826842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59313526	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6657854	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6674252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629676	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544629	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221614800-221617800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:221614800-221621200	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:221615000-221617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:221615200-221617600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:221615600-221635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:221615800-221620200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:221616200-221618600	Weak transcription	Brain Substantia Nigra	brain
8	chr1:221617400-221618000	Enhancers	Colon Smooth Muscle	Colon
9	chr1:221617400-221618000	Enhancers	Fetal Lung	lung
10	chr1:221617400-221618200	Enhancers	Rectal Smooth Muscle	rectum

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