Variant report
| Variant | rs6688415 |
|---|---|
| Chromosome Location | chr1:219950168-219950169 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:219943254..219945616-chr1:219948394..219950887,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12022944 | 0.91[AFR][1000 genomes] |
| rs12027738 | 0.91[AFR][1000 genomes] |
| rs12028121 | 0.91[AFR][1000 genomes] |
| rs12028892 | 0.86[AFR][1000 genomes] |
| rs12048880 | 0.83[AFR][1000 genomes] |
| rs1418748 | 0.91[AFR][1000 genomes] |
| rs1418749 | 0.91[AFR][1000 genomes] |
| rs1418750 | 0.91[AFR][1000 genomes] |
| rs2378320 | 0.91[AFR][1000 genomes] |
| rs2378321 | 0.91[AFR][1000 genomes] |
| rs2378322 | 0.91[AFR][1000 genomes] |
| rs4264002 | 0.91[AFR][1000 genomes] |
| rs4440861 | 0.91[AFR][1000 genomes] |
| rs6691756 | 0.91[AFR][1000 genomes] |
| rs6696853 | 0.91[AFR][1000 genomes] |
| rs6697094 | 0.91[AFR][1000 genomes] |
| rs6697171 | 0.91[AFR][1000 genomes] |
| rs6698185 | 0.91[AFR][1000 genomes] |
| rs7520467 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7523475 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006393 | chr1:219925261-220126458 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:219947600-219957200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
