Variant report

Variant	rs668871
Chromosome Location	chr6:160769811-160769812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10945670	0.84[EUR][1000 genomes]
rs1317652	0.84[EUR][1000 genomes]
rs1605963	0.84[EUR][1000 genomes]
rs1605964	0.84[EUR][1000 genomes]
rs1605965	0.88[ASN][1000 genomes]
rs2136676	0.84[EUR][1000 genomes]
rs2313453	0.84[EUR][1000 genomes]
rs2661845	0.81[ASN][1000 genomes]
rs2665357	0.80[EUR][1000 genomes]
rs2872317	0.84[EUR][1000 genomes]
rs3105748	0.84[EUR][1000 genomes]
rs3105749	0.84[EUR][1000 genomes]
rs3105752	0.84[EUR][1000 genomes]
rs3123633	0.84[EUR][1000 genomes]
rs3123634	0.84[EUR][1000 genomes]
rs3127574	0.85[EUR][1000 genomes]
rs316172	0.87[ASN][1000 genomes]
rs316177	0.86[ASN][1000 genomes]
rs366608	0.87[ASN][1000 genomes]
rs367213	0.87[ASN][1000 genomes]
rs372665	0.87[ASN][1000 genomes]
rs377551	0.92[ASN][1000 genomes]
rs383420	0.87[ASN][1000 genomes]
rs394487	0.92[ASN][1000 genomes]
rs396843	0.87[ASN][1000 genomes]
rs401746	0.86[ASN][1000 genomes]
rs405405	0.92[ASN][1000 genomes]
rs416879	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4235926	0.84[EUR][1000 genomes]
rs423961	0.87[ASN][1000 genomes]
rs425983	0.87[ASN][1000 genomes]
rs431747	0.87[ASN][1000 genomes]
rs435421	0.87[ASN][1000 genomes]
rs445849	0.87[ASN][1000 genomes]
rs4709425	0.84[EUR][1000 genomes]
rs4709426	0.83[EUR][1000 genomes]
rs474513	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs486339	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs486359	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs487060	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs487152	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs490275	0.87[ASN][1000 genomes]
rs501470	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs505870	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs506823	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs509707	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs518295	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519118	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs520685	0.90[ASN][1000 genomes]
rs520829	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537937	0.87[ASN][1000 genomes]
rs539298	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs539958	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs541091	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs543159	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs547290	0.87[ASN][1000 genomes]
rs555754	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs569919	0.86[ASN][1000 genomes]
rs575719	0.82[ASN][1000 genomes]
rs575796	0.87[ASN][1000 genomes]
rs581556	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs609562	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs622217	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs624319	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs634916	0.87[ASN][1000 genomes]
rs637614	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs639426	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs641990	0.89[EUR][1000 genomes]
rs673259	0.92[ASN][1000 genomes]
rs673736	0.95[EUR][1000 genomes]
rs675162	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6905958	0.84[EUR][1000 genomes]
rs6923921	0.84[EUR][1000 genomes]
rs695174	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs884742	0.84[EUR][1000 genomes]
rs9346816	0.88[EUR][1000 genomes]
rs9364552	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030746	chr6:160592321-160867031	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538493	chr6:160592321-160867031	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv886809	chr6:160670494-160979275	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv886810	chr6:160700769-160897872	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv886811	chr6:160700769-161070990	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv886812	chr6:160706661-161024848	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	esv3446643	chr6:160767862-160771710	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	esv3424011	chr6:160768387-160770935	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160768200-160770200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:160768400-160770000	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr6:160768400-160770600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:160768600-160770000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr6:160768600-160770600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr6:160768600-160770800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:160768600-160771000	Bivalent/Poised TSS	HepG2	liver
8	chr6:160768600-160771400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:160768600-160771600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:160768800-160770000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:160768800-160770000	Active TSS	Hela-S3	cervix
12	chr6:160768800-160770200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:160768800-160770400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:160768800-160770400	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:160768800-160771000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:160768800-160771200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:160768800-160771600	Active TSS	A549	lung
18	chr6:160768800-160771800	Active TSS	Aorta	Aorta
19	chr6:160769000-160770000	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:160769000-160770200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:160769000-160770200	Active TSS	Left Ventricle	heart
22	chr6:160769000-160770400	Active TSS	Right Ventricle	heart
23	chr6:160769000-160770600	Active TSS	Ovary	ovary
24	chr6:160769000-160771000	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:160769000-160771000	Active TSS	Rectal Smooth Muscle	rectum
26	chr6:160769000-160771400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:160769000-160771400	Active TSS	Right Atrium	heart
28	chr6:160769000-160772000	Active TSS	Psoas Muscle	Psoas
29	chr6:160769200-160770000	Active TSS	Primary hematopoietic stem cells	blood
30	chr6:160769200-160770000	Active TSS	Sigmoid Colon	Sigmoid Colon
31	chr6:160769200-160770000	Bivalent/Poised TSS	Thymus	Thymus
32	chr6:160769200-160770200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr6:160769200-160770400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
34	chr6:160769200-160770400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:160769200-160770400	Bivalent/Poised TSS	Colonic Mucosa	Colon
36	chr6:160769200-160770400	Flanking Active TSS	Pancreas	Pancrea
37	chr6:160769200-160770800	Active TSS	Colon Smooth Muscle	Colon
38	chr6:160769400-160770000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:160769400-160770000	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:160769400-160770000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
41	chr6:160769400-160770000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:160769400-160770000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:160769400-160770000	Active TSS	Duodenum Mucosa	Duodenum
44	chr6:160769400-160770200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:160769400-160770200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:160769400-160770200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
47	chr6:160769400-160770200	Bivalent/Poised TSS	NHLF	lung
48	chr6:160769400-160770400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:160769400-160770400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:160769400-160770400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain

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