Variant report

Variant	rs6688983
Chromosome Location	chr1:150157150-150157151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150135480..150137843-chr1:150155550..150159423,3	MCF-7	breast:
2	chr1:149857369..149865402-chr1:150155748..150164645,14	K562	blood:
3	chr1:150141416..150143115-chr1:150156273..150159432,3	K562	blood:
4	chr1:150148382..150150067-chr1:150155558..150157916,2	K562	blood:
5	chr1:150155365..150157999-chr1:150205439..150207085,2	K562	blood:
6	chr1:149855497..149863444-chr1:150156597..150162643,11	K562	blood:
7	chr1:149858148..149861244-chr1:150153883..150158292,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000143401	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6685607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150138400-150157800	Weak transcription	Small Intestine	intestine
2	chr1:150141600-150158600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
4	chr1:150146000-150159200	Weak transcription	HSMMtube	muscle
5	chr1:150147200-150159000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:150151000-150159200	Weak transcription	Adipose Nuclei	Adipose
7	chr1:150153000-150158400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:150153200-150158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150153400-150158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:150153400-150158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:150154200-150159000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:150154400-150157200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:150154400-150158800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:150154800-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:150155000-150158800	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:150155800-150157400	Enhancers	HepG2	liver
17	chr1:150156000-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:150156400-150159200	Weak transcription	Brain Substantia Nigra	brain
19	chr1:150156600-150158400	Weak transcription	Primary B cells from cord blood	blood
20	chr1:150156600-150158600	Weak transcription	NHEK	skin
21	chr1:150156600-150159200	Weak transcription	Brain Anterior Caudate	brain
22	chr1:150156600-150159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:150156800-150158000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:150156800-150158200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr1:150156800-150158800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:150156800-150159200	Weak transcription	HMEC	breast
27	chr1:150157000-150157800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:150157000-150158000	Weak transcription	Placenta	Placenta
29	chr1:150157000-150158600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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