Variant report

Variant	rs6689485
Chromosome Location	chr1:214432565-214432566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214427682..214429726-chr1:214431401..214432922,2	MCF-7	breast:
2	chr1:214393546..214395797-chr1:214432514..214434746,2	MCF-7	breast:
3	chr1:214432183..214432843-chr18:26269660..26270520,2	MCF-7	breast:
4	chr1:214431347..214435470-chr1:214452368..214457284,9	MCF-7	breast:
5	chr1:214431964..214433793-chr1:214436755..214439299,2	MCF-7	breast:
6	chr1:214422523..214426510-chr1:214432301..214435212,4	MCF-7	breast:
7	chr1:214431778..214435128-chr1:214499085..214502575,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPN14-2	chr1:214427429-214436307	XLOC_001200

No data

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214417800-214432800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:214429200-214432800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:214431400-214432800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:214431400-214433400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:214431400-214434200	Weak transcription	Fetal Heart	heart
6	chr1:214432000-214433400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:214432000-214433800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:214432400-214434000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:214432400-214435400	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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