Variant report

Variant	rs6689751
Chromosome Location	chr1:174981282-174981283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174967096..174970659-chr1:174981028..174985682,6	MCF-7	breast:
2	chr1:174968752..174972930-chr1:174980465..174984788,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10489331	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489334	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10912852	1.00[EUR][1000 genomes]
rs10912862	1.00[EUR][1000 genomes]
rs10912866	1.00[EUR][1000 genomes]
rs10912869	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12061403	1.00[EUR][1000 genomes]
rs12062145	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072529	1.00[EUR][1000 genomes]
rs12075140	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12089375	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13376513	1.00[EUR][1000 genomes]
rs16847652	1.00[EUR][1000 genomes]
rs16847670	1.00[EUR][1000 genomes]
rs16847689	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16847701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1894679	1.00[EUR][1000 genomes]
rs4650677	1.00[EUR][1000 genomes]
rs57512007	1.00[EUR][1000 genomes]
rs58503437	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60411387	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6425311	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74128526	1.00[EUR][1000 genomes]
rs74128530	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174969800-174981600	Weak transcription	Gastric	stomach
2	chr1:174970000-174982400	Weak transcription	Esophagus	oesophagus
3	chr1:174970000-174991800	Weak transcription	Stomach Mucosa	stomach
4	chr1:174970600-174981800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:174970800-174986000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:174971000-174991600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:174972600-174981800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:174973000-174982200	Weak transcription	Fetal Brain Male	brain
9	chr1:174973000-174990600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:174973200-174982000	Weak transcription	Small Intestine	intestine
11	chr1:174973200-174983600	Strong transcription	K562	blood
12	chr1:174973200-174987800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:174973200-174987800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:174973200-174988200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:174973600-174987800	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:174973600-174988200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:174973600-174990400	Strong transcription	Primary T cells from cord blood	blood
18	chr1:174973800-174983800	Strong transcription	NH-A	brain
19	chr1:174973800-174984000	Strong transcription	Hela-S3	cervix
20	chr1:174973800-174984600	Strong transcription	NHDF-Ad	bronchial
21	chr1:174973800-174987600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:174973800-174987800	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr1:174973800-174987800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:174973800-174987800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr1:174973800-174987800	Strong transcription	Fetal Intestine Large	intestine
26	chr1:174973800-174987800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr1:174973800-174988200	Strong transcription	Primary hematopoietic stem cells	blood
28	chr1:174973800-174988400	Strong transcription	Fetal Thymus	thymus
29	chr1:174973800-174988800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr1:174973800-174988800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr1:174973800-174989800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr1:174974000-174987800	Strong transcription	Liver	Liver
33	chr1:174974000-174988200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:174974000-174988400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr1:174974200-174984000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:174974200-174984400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:174974200-174985200	Strong transcription	Fetal Muscle Leg	muscle
38	chr1:174974200-174987600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:174974200-174987800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:174974200-174987800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:174974200-174987800	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr1:174974200-174987800	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr1:174974200-174987800	Strong transcription	A549	lung
44	chr1:174974200-174987800	Strong transcription	HMEC	breast
45	chr1:174974200-174987800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr1:174974200-174988200	Strong transcription	Thymus	Thymus
47	chr1:174974200-174988400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:174974200-174988400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:174974200-174988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:174974200-174990200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links