Variant report
| Variant | rs66909600 |
|---|---|
| Chromosome Location | chr6:49774862-49774863 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs183115 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs184857 | 0.91[AMR][1000 genomes] |
| rs2068681 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3799688 | 0.92[ASN][1000 genomes] |
| rs488132 | 0.87[AMR][1000 genomes] |
| rs500032 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs512299 | 0.83[AMR][1000 genomes] |
| rs521489 | 0.87[AMR][1000 genomes] |
| rs553584 | 0.87[AMR][1000 genomes] |
| rs56085173 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs56148648 | 0.83[EUR][1000 genomes] |
| rs571257 | 0.87[AMR][1000 genomes] |
| rs584747 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs623996 | 0.91[AMR][1000 genomes] |
| rs626221 | 0.83[AMR][1000 genomes] |
| rs659190 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs670624 | 0.80[EUR][1000 genomes] |
| rs693929 | 0.87[AMR][1000 genomes] |
| rs699960 | 0.91[AMR][1000 genomes] |
| rs699974 | 0.87[AMR][1000 genomes] |
| rs699982 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs699990 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs699991 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs699993 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs699994 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs699996 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7760595 | 0.87[AMR][1000 genomes] |
| rs812969 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv969302 | chr6:49767553-49782099 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3434423 | chr6:49771042-49788886 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49765200-49775200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr6:49774200-49775000 | Weak transcription | Fetal Intestine Small | intestine |
| 3 | chr6:49774200-49782600 | Weak transcription | Fetal Intestine Large | intestine |
