Variant report

Variant	rs6691101
Chromosome Location	chr1:166457774-166457775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10918487	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6691101	XCL1	cis	cerebellum	SCAN
rs6691101	FMO9P	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166455200-166458800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:166455800-166458000	Enhancers	K562	blood
3	chr1:166456400-166458600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:166457000-166458000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:166457000-166458000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:166457000-166458800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:166457000-166458800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:166457000-166458800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:166457200-166457800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:166457200-166458000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:166457200-166458600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr1:166457400-166458600	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:166457400-166458600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:166457600-166458000	Enhancers	Liver	Liver
15	chr1:166457600-166458200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:166457600-166458600	Enhancers	Primary B cells from peripheral blood	blood
17	chr1:166457600-166458600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:166457600-166458600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:166457600-166458800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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