Variant report

Variant	rs6692345
Chromosome Location	chr1:95016348-95016349
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95005939..95010305-chr1:95012395..95021281,11	MCF-7	breast:
2	chr1:95015461..95017197-chr1:95086412..95088142,2	K562	blood:
3	chr1:95007066..95011283-chr1:95013175..95017472,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117525	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2021962	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2021963	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3748017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes]
rs3917606	0.93[AMR][1000 genomes]
rs698943	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs698944	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs725299	1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72968367	1.00[ASN][1000 genomes]
rs7531358	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs841698	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95008200-95018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:95008200-95019800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:95008800-95016600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:95010200-95017600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:95010400-95017800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:95010800-95016600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:95011000-95016400	Weak transcription	Fetal Heart	heart
8	chr1:95011000-95017200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:95011000-95019000	Weak transcription	HSMM	muscle
10	chr1:95011600-95018600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:95011600-95025400	Weak transcription	NHLF	lung
12	chr1:95013600-95022000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:95014000-95017800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:95014600-95018800	Enhancers	NHEK	skin
15	chr1:95014600-95022400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:95014800-95022000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:95014800-95022200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:95014800-95022200	Enhancers	HMEC	breast
19	chr1:95015000-95019200	Enhancers	Stomach Mucosa	stomach
20	chr1:95015400-95016800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr1:95015400-95018200	Enhancers	Fetal Intestine Large	intestine
22	chr1:95015600-95016400	Enhancers	Esophagus	oesophagus
23	chr1:95015600-95016800	Enhancers	HSMMtube	muscle
24	chr1:95015600-95018400	Enhancers	Pancreas	Pancrea
25	chr1:95015600-95020400	Enhancers	Fetal Intestine Small	intestine
26	chr1:95015600-95022200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:95015800-95016400	Weak transcription	Right Atrium	heart
28	chr1:95015800-95021000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:95016000-95016600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:95016000-95016800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:95016000-95016800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:95016000-95017200	Enhancers	Fetal Lung	lung
33	chr1:95016000-95017200	Weak transcription	Placenta	Placenta
34	chr1:95016000-95018000	Enhancers	Fetal Kidney	kidney
35	chr1:95016000-95020400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:95016200-95016400	Enhancers	Fetal Stomach	stomach
37	chr1:95016200-95016400	Enhancers	Gastric	stomach
38	chr1:95016200-95016600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:95016200-95016600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr1:95016200-95016600	Enhancers	Fetal Muscle Leg	muscle
41	chr1:95016200-95016600	Enhancers	Psoas Muscle	Psoas
42	chr1:95016200-95016800	Flanking Active TSS	HepG2	liver
43	chr1:95016200-95021000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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