Variant report

Variant	rs6692359
Chromosome Location	chr1:210039698-210039699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11806020	1.00[EUR][1000 genomes]
rs17015326	1.00[EUR][1000 genomes]
rs56655983	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57139400	1.00[EUR][1000 genomes]
rs59435160	0.81[AFR][1000 genomes]
rs60014300	1.00[EUR][1000 genomes]
rs60079073	1.00[EUR][1000 genomes]
rs60326345	0.81[AFR][1000 genomes]
rs6540558	1.00[EUR][1000 genomes]
rs6540562	1.00[EUR][1000 genomes]
rs6684236	1.00[EUR][1000 genomes]
rs735693	0.82[AFR][1000 genomes]
rs74156256	1.00[EUR][1000 genomes]
rs74156257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7550222	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210017600-210041200	Weak transcription	Fetal Brain Male	brain
2	chr1:210028200-210042400	Weak transcription	NHDF-Ad	bronchial
3	chr1:210037000-210042400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:210037200-210041800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:210037200-210041800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:210037200-210042400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:210037400-210041800	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:210037400-210042400	Weak transcription	Fetal Lung	lung
9	chr1:210037600-210041000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:210037600-210042200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:210037600-210042200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:210037600-210042400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:210038000-210042200	Weak transcription	Brain Anterior Caudate	brain
14	chr1:210038000-210043200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:210038000-210044000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:210038000-210044600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:210038000-210048800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:210038600-210042600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:210038600-210042800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:210039400-210039800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr1:210039400-210040000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:210039400-210040200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:210039600-210039800	Enhancers	Primary hematopoietic stem cells	blood

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