Variant report

Variant	rs669327
Chromosome Location	chr11:77658290-77658291
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10793267	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899420	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237331	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11237343	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11826938	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1630344	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1668326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1668327	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790243	0.82[EUR][1000 genomes]
rs1790249	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2510965	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3018165	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs586363	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs597289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs619142	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs629035	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs632040	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs632412	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592754	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592755	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7101610	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7105941	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7124008	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7929510	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949171	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv975205	chr11:77628075-77671380	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv8841	chr11:77641044-77692578	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77583400-77670600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:77583400-77690000	Weak transcription	Colonic Mucosa	Colon
3	chr11:77592800-77690000	Weak transcription	Small Intestine	intestine
4	chr11:77595800-77671000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:77597800-77669800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:77597800-77671000	Weak transcription	Fetal Brain Male	brain
7	chr11:77597800-77678200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:77597800-77690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:77597800-77690000	Weak transcription	Esophagus	oesophagus
10	chr11:77597800-77690000	Weak transcription	Gastric	stomach
11	chr11:77602800-77690000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:77614800-77700200	Weak transcription	Psoas Muscle	Psoas
13	chr11:77618200-77668200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:77619000-77667000	Weak transcription	Fetal Kidney	kidney
15	chr11:77619000-77668000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:77625800-77665600	Weak transcription	HSMMtube	muscle
17	chr11:77625800-77697400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:77626000-77666200	Weak transcription	Brain Substantia Nigra	brain
19	chr11:77626000-77690000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:77626200-77665400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:77626200-77689400	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:77626600-77665600	Weak transcription	Ovary	ovary
23	chr11:77626600-77689600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:77626600-77690000	Weak transcription	Pancreas	Pancrea
25	chr11:77627800-77684800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:77628000-77671000	Weak transcription	HSMM	muscle
27	chr11:77628400-77668000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:77629400-77668000	Weak transcription	Aorta	Aorta
29	chr11:77630000-77665400	Weak transcription	Lung	lung
30	chr11:77630200-77669600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:77630600-77665400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:77638200-77665400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:77638200-77665600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:77638600-77665400	Weak transcription	Placenta	Placenta
35	chr11:77639400-77665400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:77639400-77667000	Weak transcription	Fetal Lung	lung
37	chr11:77639400-77670200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:77639800-77668000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:77640000-77667800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:77641200-77669600	Weak transcription	K562	blood
41	chr11:77641600-77671000	Weak transcription	Hela-S3	cervix
42	chr11:77642200-77668000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:77642400-77658800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:77643800-77658800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:77644600-77667200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:77644800-77661400	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:77644800-77667400	Weak transcription	Spleen	Spleen
48	chr11:77645000-77665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:77645000-77665400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:77645000-77666200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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