Variant report

Variant	rs6693450
Chromosome Location	chr1:112853834-112853835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1175632	1.00[MEX][hapmap]
rs1175640	1.00[MEX][hapmap]
rs1175642	1.00[MEX][hapmap]
rs17030350	1.00[MEX][hapmap]
rs1936047	1.00[MEX][hapmap]
rs3128358	0.81[EUR][1000 genomes]
rs3128362	0.81[EUR][1000 genomes]
rs6537734	0.84[EUR][1000 genomes]
rs72978051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7542272	1.00[MEX][hapmap]
rs7543986	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv2454	chr1:112813849-112858259	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv508526	chr1:112839396-112915215	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112847400-112854800	Weak transcription	Ovary	ovary
2	chr1:112851400-112855000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:112851400-112855600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:112851400-112856400	Weak transcription	Adipose Nuclei	Adipose
5	chr1:112851600-112866000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:112851800-112859400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:112852200-112855000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:112852600-112854800	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:112852800-112855200	Weak transcription	Fetal Lung	lung
10	chr1:112853000-112860400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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