Variant report

Variant	rs6693806
Chromosome Location	chr1:74861767-74861768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FPGT-7	chr1:74859668-74864369	ucscGeneNc_uc001dgh_2

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10890127	0.84[CHB][hapmap]
rs12048736	0.82[CHB][hapmap]
rs274581	0.81[CHB][hapmap]
rs699844	0.84[CHB][hapmap]
rs7515072	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004451	chr1:74107125-74874389	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv534999	chr1:74107125-74874389	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv522147	chr1:74338530-74983835	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1003171	chr1:74407468-75122270	Strong transcription Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv535000	chr1:74407468-75122270	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1011308	chr1:74545016-74932777	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1007414	chr1:74726454-74976335	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv535002	chr1:74726454-74976335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1010042	chr1:74798856-75001977	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv461984	chr1:74804833-74874471	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv546577	chr1:74804833-74874471	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1002903	chr1:74831209-74993866	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	esv1831804	chr1:74856263-74879770	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74858000-74863400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:74859400-74863800	Enhancers	Fetal Stomach	stomach
3	chr1:74859600-74863200	Enhancers	Stomach Smooth Muscle	stomach
4	chr1:74859800-74862200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:74860200-74862400	Weak transcription	Fetal Kidney	kidney
6	chr1:74860200-74862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:74860400-74863200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:74860600-74863400	Enhancers	Fetal Lung	lung
9	chr1:74860600-74863800	Enhancers	Fetal Heart	heart
10	chr1:74860800-74861800	Enhancers	Brain Anterior Caudate	brain
11	chr1:74860800-74861800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:74860800-74862000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:74860800-74862000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:74860800-74862800	Enhancers	Left Ventricle	heart
15	chr1:74861000-74861800	Enhancers	HSMM	muscle
16	chr1:74861000-74862000	Enhancers	HSMMtube	muscle
17	chr1:74861000-74862600	Enhancers	Brain Substantia Nigra	brain
18	chr1:74861000-74862800	Enhancers	Right Atrium	heart
19	chr1:74861000-74863200	Enhancers	Fetal Muscle Leg	muscle
20	chr1:74861000-74863200	Enhancers	Ovary	ovary
21	chr1:74861200-74861800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:74861200-74861800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:74861200-74861800	Enhancers	Brain Germinal Matrix	brain
24	chr1:74861200-74862000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:74861200-74862000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:74861200-74862600	Enhancers	Colon Smooth Muscle	Colon
27	chr1:74861400-74862200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:74861400-74862400	Weak transcription	Brain Angular Gyrus	brain
29	chr1:74861400-74862600	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:74861400-74863000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:74861400-74863200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:74861600-74862000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:74861600-74862600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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