Variant report

Variant	rs66938465
Chromosome Location	chr1:160592374-160592375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:160591264..160593776-chr1:160598506..160600175,2	K562	blood:
2	chr1:160589254..160593885-chr1:160595406..160601586,7	K562	blood:
3	chr1:160591815..160594095-chr1:160611969..160614792,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12058421	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6672302	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160579800-160593200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:160584400-160594600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:160585200-160592400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:160585600-160594800	Weak transcription	K562	blood
5	chr1:160587400-160598400	Genic enhancers	Fetal Thymus	thymus
6	chr1:160588800-160598000	Genic enhancers	Thymus	Thymus
7	chr1:160589000-160592800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:160589000-160596600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:160589800-160596200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:160589800-160599400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:160590400-160592600	Weak transcription	Small Intestine	intestine
12	chr1:160590800-160594000	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr1:160590800-160594200	Enhancers	Primary B cells from cord blood	blood
14	chr1:160590800-160598000	Enhancers	Dnd41	blood
15	chr1:160591000-160596000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:160591200-160593600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:160591400-160592400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr1:160591400-160593800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr1:160591400-160593800	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:160591400-160594000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
21	chr1:160591400-160594200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:160591400-160594800	Genic enhancers	Primary T cells from cord blood	blood
23	chr1:160591400-160596800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr1:160591600-160594000	Genic enhancers	Primary B cells from peripheral blood	blood
25	chr1:160591800-160593200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:160591800-160593200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:160591800-160595000	Weak transcription	Spleen	Spleen
28	chr1:160591800-160595200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:160591800-160595200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr1:160591800-160595400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr1:160591800-160596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:160591800-160605200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
33	chr1:160592000-160595200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:160592000-160596600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr1:160592200-160595400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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