Variant report

Variant	rs6694110
Chromosome Location	chr1:10039362-10039363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1660723	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
2	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3372906	chr1:9838995-10052992	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1012469	chr1:9925714-10147796	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1012301	chr1:9963962-10118393	Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv534853	chr1:9963962-10118393	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv1001742	chr1:9971776-10116767	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10011000-10044800	Weak transcription	NHDF-Ad	bronchial
2	chr1:10011800-10042200	Weak transcription	K562	blood
3	chr1:10016400-10042400	Weak transcription	HMEC	breast
4	chr1:10021400-10043200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:10021600-10041600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:10021600-10041600	Weak transcription	HSMMtube	muscle
7	chr1:10021600-10049000	Weak transcription	HSMM	muscle
8	chr1:10023400-10044000	Weak transcription	HepG2	liver
9	chr1:10025800-10046800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:10028400-10050000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:10029600-10041000	Weak transcription	Osteobl	bone
12	chr1:10029600-10042200	Weak transcription	GM12878-XiMat	blood
13	chr1:10030400-10041000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:10030400-10043000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:10030800-10044600	Weak transcription	Brain Germinal Matrix	brain
16	chr1:10031200-10042200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:10031200-10042200	Weak transcription	Small Intestine	intestine
18	chr1:10031600-10039600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:10031600-10044600	Strong transcription	Fetal Intestine Large	intestine
20	chr1:10031600-10045600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:10031600-10046200	Strong transcription	Fetal Intestine Small	intestine
22	chr1:10031600-10047200	Strong transcription	Fetal Stomach	stomach
23	chr1:10031800-10039600	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:10032000-10039400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr1:10032000-10039600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr1:10032000-10039600	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:10032000-10039800	Strong transcription	Fetal Muscle Leg	muscle
28	chr1:10032000-10043800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:10032000-10045200	Strong transcription	Fetal Muscle Trunk	muscle
30	chr1:10032000-10046600	Strong transcription	Liver	Liver
31	chr1:10032200-10039400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:10032200-10039600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:10032200-10044200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:10032200-10044200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr1:10032200-10045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:10032400-10039400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:10032400-10042200	Weak transcription	NH-A	brain
38	chr1:10032400-10044200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:10032600-10043400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:10032600-10044400	Strong transcription	Primary T cells from cord blood	blood
41	chr1:10032800-10057000	Weak transcription	Psoas Muscle	Psoas
42	chr1:10033800-10044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr1:10034200-10039400	Strong transcription	Brain Cingulate Gyrus	brain
44	chr1:10034200-10041200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:10034200-10042200	Weak transcription	Dnd41	blood
46	chr1:10034400-10042800	Strong transcription	Placenta	Placenta
47	chr1:10034400-10048000	Weak transcription	Stomach Mucosa	stomach
48	chr1:10034600-10042200	Weak transcription	Aorta	Aorta
49	chr1:10034800-10042800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:10035000-10039400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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