Variant report

Variant	rs669416
Chromosome Location	chr18:8855198-8855199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:8841452..8843740-chr18:8854124..8856281,2	K562	blood:
2	chr18:8852990..8855340-chr18:8856500..8858443,2	K562	blood:
3	chr18:8846698..8849745-chr18:8854648..8857686,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28838099	0.83[ASN][1000 genomes]
rs690011	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs690034	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv909363	chr18:8775184-8858086	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8845200-8856200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:8845600-8856000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:8852000-8856200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:8853800-8855400	Enhancers	NHLF	lung
5	chr18:8854000-8855200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:8854000-8856600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:8854200-8855200	Enhancers	NHDF-Ad	bronchial
8	chr18:8854200-8855400	Enhancers	Fetal Kidney	kidney
9	chr18:8854200-8856200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr18:8854400-8855200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr18:8854400-8856000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr18:8854600-8855200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr18:8854800-8856000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:8854800-8858800	Weak transcription	A549	lung
15	chr18:8854800-8859200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:8855000-8855200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:8855000-8855200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr18:8855000-8855200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr18:8855000-8855200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr18:8855000-8855400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr18:8855000-8855400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr18:8855000-8856000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr18:8855000-8856200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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