Variant report

Variant	rs6694286
Chromosome Location	chr1:159439847-159439848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57937550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59146397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60787321	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6427469	0.81[YRI][hapmap]
rs6678321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017478	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122914	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159438200-159440200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:159438200-159444600	Enhancers	HUVEC	blood vessel
3	chr1:159439000-159440400	Enhancers	Liver	Liver
4	chr1:159439400-159440200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:159439600-159440000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:159439600-159440000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:159439600-159440200	Enhancers	Right Atrium	heart
8	chr1:159439600-159441200	Weak transcription	Osteobl	bone
9	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links