Variant report

Variant	rs66953206
Chromosome Location	chr13:67702735-67702736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67701562..67704458-chr13:67707651..67710683,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11839518	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429101	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12430605	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12430801	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12862246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12870318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082149	0.97[ASN][1000 genomes]
rs1927814	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34505256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7985006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8000291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv832641	chr13:67671691-67708713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67694000-67708400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:67699400-67706600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67699600-67703400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:67700400-67704600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:67700800-67703600	Enhancers	Brain Angular Gyrus	brain
6	chr13:67700800-67704600	Weak transcription	Left Ventricle	heart
7	chr13:67701200-67703600	Enhancers	Brain Substantia Nigra	brain
8	chr13:67701400-67703200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:67701400-67704600	Enhancers	Brain Hippocampus Middle	brain
10	chr13:67701400-67707200	Weak transcription	A549	lung
11	chr13:67701600-67702800	Enhancers	Brain Anterior Caudate	brain
12	chr13:67701600-67703000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:67701800-67703600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:67701800-67704200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:67702000-67703000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr13:67702200-67702800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr13:67702200-67702800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr13:67702200-67703000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:67702200-67703200	Enhancers	K562	blood
20	chr13:67702400-67702800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr13:67702400-67705600	Weak transcription	Fetal Heart	heart
22	chr13:67702600-67703000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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