Variant report

Variant	rs6695404
Chromosome Location	chr1:213589569-213589570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34554953	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213583800-213595800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:213587400-213590800	Weak transcription	Fetal Brain Male	brain
3	chr1:213588200-213590600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:213588400-213590800	Enhancers	HepG2	liver
5	chr1:213588600-213590000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:213588600-213590400	Enhancers	Placenta	Placenta
7	chr1:213588800-213590400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:213588800-213590600	Enhancers	Pancreas	Pancrea
9	chr1:213589200-213590000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:213589400-213589600	Enhancers	Fetal Brain Female	brain
11	chr1:213589400-213589800	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links