Variant report

Variant	rs6695760
Chromosome Location	chr1:161885545-161885546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1006310	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10918137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10918243	0.80[ASN][1000 genomes]
rs11590304	0.81[ASN][1000 genomes]
rs12124509	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1847383	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257107	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2340720	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2340721	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2499854	0.80[EUR][1000 genomes]
rs4656336	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4657121	0.83[ASN][1000 genomes]
rs61802510	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6666482	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6683830	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7414603	0.80[ASN][1000 genomes]
rs7519514	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs905594	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs931778	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3440913	chr1:161864485-161897210	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3353497	chr1:161864505-161897180	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6695760	ATF6	Cis_1M	lymphoblastoid	RTeQTL
rs6695760	FCRLA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161824200-161928400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:161836600-161888400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:161861600-161891400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:161861600-161906400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:161861600-161936000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:161875600-161888400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:161877400-161891400	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:161878200-161888200	Weak transcription	Fetal Heart	heart
9	chr1:161879200-161886000	Weak transcription	Brain Angular Gyrus	brain
10	chr1:161879200-161886800	Weak transcription	Esophagus	oesophagus
11	chr1:161880000-161890600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:161880000-161891600	Weak transcription	Fetal Stomach	stomach
13	chr1:161880400-161888400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:161880600-161888000	Weak transcription	Right Ventricle	heart
15	chr1:161880600-161890800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:161880600-161892000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:161880800-161888400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:161880800-161891200	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:161880800-161891200	Weak transcription	NHLF	lung
20	chr1:161881000-161886000	Strong transcription	Primary B cells from cord blood	blood
21	chr1:161881000-161887200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr1:161881000-161890600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:161881400-161886000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr1:161881400-161886000	Weak transcription	Hela-S3	cervix
25	chr1:161881600-161887200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:161881600-161898800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:161881600-161912000	Weak transcription	Aorta	Aorta
28	chr1:161881800-161887200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr1:161881800-161887200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:161881800-161887200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:161881800-161890400	Weak transcription	HSMMtube	muscle
32	chr1:161882000-161886000	Strong transcription	Adipose Nuclei	Adipose
33	chr1:161882000-161887400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:161882000-161887800	Weak transcription	Spleen	Spleen
35	chr1:161882200-161888400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr1:161882200-161889400	Weak transcription	Brain Substantia Nigra	brain
37	chr1:161882400-161886000	Genic enhancers	Liver	Liver
38	chr1:161882400-161886000	Strong transcription	Placenta	Placenta
39	chr1:161882400-161887000	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:161882400-161887000	Strong transcription	Dnd41	blood
41	chr1:161882600-161885800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:161883000-161898600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr1:161883200-161888400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr1:161883200-161916000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:161883400-161885600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:161883400-161886000	Strong transcription	K562	blood
47	chr1:161883400-161886400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:161883400-161887000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr1:161883400-161887200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:161883400-161896200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links