Variant report

Variant	rs6696961
Chromosome Location	chr1:152858278-152858279
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12021601	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12022870	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12080468	1.00[AMR][1000 genomes]
rs1611761	1.00[AMR][1000 genomes]
rs16834738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17879439	1.00[AMR][1000 genomes]
rs17880410	1.00[AMR][1000 genomes]
rs17881511	1.00[AMR][1000 genomes]
rs17881530	1.00[AMR][1000 genomes]
rs17882306	1.00[AMR][1000 genomes]
rs17884656	1.00[AMR][1000 genomes]
rs2339383	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs28924714	1.00[AMR][1000 genomes]
rs28924716	1.00[AMR][1000 genomes]
rs28924720	1.00[AMR][1000 genomes]
rs3737862	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4240863	0.82[YRI][hapmap]
rs4845325	0.81[YRI][hapmap]
rs56979260	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57034461	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58039969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58965301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6658402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6666622	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6667024	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697499	1.00[AMR][1000 genomes]
rs7520592	1.00[AMR][1000 genomes]
rs7552416	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv999918	chr1:152749733-152861866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv831592	chr1:152815054-152997162	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152855600-152858400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:152855600-152859600	Enhancers	Ovary	ovary
3	chr1:152855600-152861600	Enhancers	HMEC	breast
4	chr1:152856000-152858400	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:152856000-152858400	Enhancers	NHEK	skin
6	chr1:152856000-152861400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:152856400-152858600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:152856600-152859400	Enhancers	NHLF	lung
9	chr1:152856800-152859600	Enhancers	Osteobl	bone
10	chr1:152857000-152859200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:152857400-152858800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:152857600-152858600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:152857600-152860400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:152857800-152858400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:152857800-152859600	Enhancers	Liver	Liver
16	chr1:152858000-152859000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:152858000-152859000	Weak transcription	Esophagus	oesophagus
18	chr1:152858200-152858400	Enhancers	Aorta	Aorta
19	chr1:152858200-152859000	Enhancers	Duodenum Smooth Muscle	Duodenum

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