Variant report

Variant	rs6698243
Chromosome Location	chr1:175408200-175408201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1102653	0.95[EUR][1000 genomes]
rs1385542	0.98[EUR][1000 genomes]
rs2097462	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859047	0.97[EUR][1000 genomes]
rs4652090	0.85[ASN][1000 genomes]
rs6677247	0.90[ASN][1000 genomes]
rs6701695	0.88[ASN][1000 genomes]
rs743904	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514113	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859462	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs859463	0.96[EUR][1000 genomes]
rs859474	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs859475	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs859476	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs859479	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs860907	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764232	chr1:175387997-175504394	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524232	chr1:175403509-175411978	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1792278	chr1:175404515-175429913	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175400000-175413800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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