Variant report

Variant	rs669830
Chromosome Location	chr6:147840595-147840596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147840543..147842961-chr6:147843338..147845478,3	K562	blood:
2	chr6:147823685..147826215-chr6:147840187..147842186,2	MCF-7	breast:
3	chr6:147833526..147835047-chr6:147839440..147840941,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1222119	0.87[CEU][hapmap]
rs1631864	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1789696	0.94[CEU][hapmap]
rs1789697	0.89[CEU][hapmap]
rs1789698	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2780850	0.85[CEU][hapmap]
rs471833	0.87[CEU][hapmap]
rs472577	1.00[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4896920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs494234	0.87[CEU][hapmap]
rs494395	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs536996	0.87[CEU][hapmap]
rs537817	0.87[CEU][hapmap]
rs538563	0.87[CEU][hapmap]
rs540384	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs607474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs609205	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs609963	0.94[CEU][hapmap]
rs618181	0.87[CEU][hapmap]
rs623379	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs634979	0.87[CEU][hapmap]
rs636447	0.87[CEU][hapmap]
rs648995	0.87[CEU][hapmap]
rs650375	0.87[CEU][hapmap]
rs655698	0.87[CEU][hapmap]
rs660814	0.87[CEU][hapmap]
rs666217	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66812182	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6923561	1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73020122	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604841	chr6:147832156-148193929	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1020247	chr6:147834097-148478053	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147831600-147852000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:147832400-147844600	Weak transcription	HSMMtube	muscle
3	chr6:147832400-147851200	Weak transcription	Fetal Stomach	stomach
4	chr6:147832400-147851800	Weak transcription	Fetal Kidney	kidney
5	chr6:147832600-147851200	Weak transcription	Fetal Lung	lung
6	chr6:147833000-147844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:147835400-147848200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:147837200-147841800	Strong transcription	HSMM	muscle
9	chr6:147837400-147856400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:147838200-147847000	Weak transcription	Liver	Liver
11	chr6:147838800-147851400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:147840200-147842800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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