Variant report

Variant	rs6698392
Chromosome Location	chr1:223676360-223676361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10157965	1.00[ASN][1000 genomes]
rs11261292	1.00[ASN][1000 genomes]
rs12138605	1.00[ASN][1000 genomes]
rs12141379	1.00[ASN][1000 genomes]
rs12141649	1.00[ASN][1000 genomes]
rs4453033	1.00[ASN][1000 genomes]
rs4568823	1.00[ASN][1000 genomes]
rs4636451	1.00[ASN][1000 genomes]
rs6661598	1.00[ASN][1000 genomes]
rs7414159	1.00[ASN][1000 genomes]
rs74148031	1.00[ASN][1000 genomes]
rs9660111	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223674400-223676400	Weak transcription	Stomach Mucosa	stomach
2	chr1:223674400-223677800	Weak transcription	HUVEC	blood vessel
3	chr1:223674400-223678000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:223674400-223678400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:223674600-223677600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:223674600-223677800	Weak transcription	NHDF-Ad	bronchial
7	chr1:223674600-223678400	Weak transcription	Esophagus	oesophagus
8	chr1:223674800-223677600	Weak transcription	Osteobl	bone
9	chr1:223674800-223678000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:223675000-223676800	Weak transcription	NHEK	skin
11	chr1:223675000-223677400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:223675000-223677600	Weak transcription	NH-A	brain
13	chr1:223675000-223677800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:223675600-223676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:223675800-223677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:223675800-223677400	Weak transcription	HMEC	breast
17	chr1:223675800-223678400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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