Variant report

Variant	rs6698916
Chromosome Location	chr1:58019439-58019440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1524723	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17116037	0.94[AFR][1000 genomes]
rs59651331	1.00[AFR][1000 genomes]
rs61250488	1.00[AFR][1000 genomes]
rs72906500	0.83[AFR][1000 genomes]
rs72908503	1.00[AFR][1000 genomes]
rs72908535	0.83[AFR][1000 genomes]
rs72914804	0.93[AFR][1000 genomes]
rs72914808	0.93[AFR][1000 genomes]
rs72914825	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870802	chr1:57965114-58037031	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv523574	chr1:58018103-58087789	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58015800-58020200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:58017600-58020000	Weak transcription	Stomach Mucosa	stomach
3	chr1:58017800-58019800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:58019200-58019600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:58019200-58020200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:58019400-58019600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:58019400-58020000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:58019400-58020000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:58019400-58020000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:58019400-58020000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:58019400-58020200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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