Variant report

Variant	rs66994875
Chromosome Location	chr3:178887872-178887873
allele	-/ACAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178882042..178883552-chr3:178887353..178888877,2	K562	blood:
2	chr3:178884535..178886468-chr3:178887552..178889136,2	K562	blood:
3	chr3:178864911..178866513-chr3:178885186..178888175,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121879	Chromatin interaction
ENSG00000229102	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1010571	chr3:178876965-178888153	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2763744	chr3:178883172-178888165	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv275373	chr3:178887218-178892336	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178867800-178900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:178868000-178892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:178868600-178893000	Weak transcription	Aorta	Aorta
4	chr3:178869200-178898000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:178870800-178896400	Weak transcription	K562	blood
6	chr3:178874800-178888600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:178877400-178897800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:178879200-178891800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:178879400-178892000	Weak transcription	Lung	lung
10	chr3:178879400-178896400	Weak transcription	Right Atrium	heart
11	chr3:178879600-178896400	Weak transcription	Left Ventricle	heart
12	chr3:178883600-178892400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:178883600-178893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:178883800-178905800	Weak transcription	Fetal Kidney	kidney
15	chr3:178884800-178888400	Weak transcription	Fetal Lung	lung
16	chr3:178886800-178888600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:178886800-178891800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:178887200-178888000	ZNF genes & repeats	Fetal Brain Male	brain
19	chr3:178887200-178892400	Weak transcription	HUVEC	blood vessel
20	chr3:178887200-178912000	Weak transcription	Thymus	Thymus
21	chr3:178887800-178888000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr3:178887800-178888000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:178887800-178888000	Enhancers	Adipose Nuclei	Adipose
24	chr3:178887800-178888200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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