Variant report
Variant | rs6699837 |
---|---|
Chromosome Location | chr1:70283744-70283745 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10889860 | 0.93[YRI][hapmap] |
rs11209557 | 0.86[YRI][hapmap] |
rs11209564 | 0.93[YRI][hapmap] |
rs11209578 | 0.90[YRI][hapmap] |
rs11209579 | 0.90[YRI][hapmap] |
rs11583726 | 0.96[YRI][hapmap] |
rs12024338 | 0.97[YRI][hapmap] |
rs12025637 | 0.86[YRI][hapmap] |
rs12031885 | 0.93[YRI][hapmap] |
rs12039534 | 0.90[YRI][hapmap] |
rs1913266 | 0.83[YRI][hapmap] |
rs1913268 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs1913269 | 0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
rs1913270 | 0.89[YRI][hapmap] |
rs1938580 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1938584 | 0.93[YRI][hapmap] |
rs2421306 | 0.87[YRI][hapmap] |
rs2421308 | 0.83[YRI][hapmap] |
rs6424609 | 0.89[YRI][hapmap] |
rs6424610 | 0.90[YRI][hapmap] |
rs6662513 | 0.90[YRI][hapmap] |
rs6665742 | 0.90[YRI][hapmap] |
rs6686752 | 0.96[YRI][hapmap] |
rs6695450 | 0.86[YRI][hapmap] |
rs6703428 | 0.93[YRI][hapmap] |
rs7530457 | 0.89[YRI][hapmap] |
rs7531255 | 0.97[YRI][hapmap] |
rs7544286 | 0.93[YRI][hapmap] |
rs9787350 | 0.84[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949691 | chr1:69749722-70302201 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv461784 | chr1:70231535-70306245 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv546452 | chr1:70231535-70306245 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | esv1842679 | chr1:70279860-70306245 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv521307 | chr1:70282875-70288647 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |