Variant report

Variant	rs67002523
Chromosome Location	chr2:53326096-53326097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17044078	0.89[EUR][1000 genomes]
rs17044082	0.85[EUR][1000 genomes]
rs17044107	0.86[EUR][1000 genomes]
rs17044109	0.89[EUR][1000 genomes]
rs17044113	0.83[EUR][1000 genomes]
rs17267748	0.80[AFR][1000 genomes]
rs58330496	0.83[EUR][1000 genomes]
rs60327066	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60398014	0.85[EUR][1000 genomes]
rs61570270	0.82[EUR][1000 genomes]
rs66702426	0.91[EUR][1000 genomes]
rs66801688	0.91[EUR][1000 genomes]
rs67051768	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6717300	0.82[EUR][1000 genomes]
rs67569557	0.85[EUR][1000 genomes]
rs67901982	0.89[EUR][1000 genomes]
rs68139522	0.83[EUR][1000 genomes]
rs72797245	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv874141	chr2:53263644-53352630	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53323400-53326200	Enhancers	Fetal Brain Male	brain
2	chr2:53325000-53327000	Enhancers	Fetal Intestine Small	intestine
3	chr2:53325200-53326200	Active TSS	A549	lung
4	chr2:53325200-53326600	Enhancers	Fetal Kidney	kidney
5	chr2:53325800-53326800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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