Variant report

Variant	rs6701160
Chromosome Location	chr1:223686843-223686844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10907388	0.88[EUR][1000 genomes]
rs28563106	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56389919	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223684800-223689000	Weak transcription	Right Atrium	heart
2	chr1:223685200-223689000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:223685800-223689000	Weak transcription	HMEC	breast
4	chr1:223685800-223690400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:223685800-223690600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:223686000-223689200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:223686200-223691200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:223686400-223687800	Enhancers	Primary T cells from cord blood	blood
9	chr1:223686600-223690400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:223686800-223687000	Enhancers	Stomach Mucosa	stomach
11	chr1:223686800-223687200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:223686800-223688800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:223686800-223690400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:223686800-223690400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:223686800-223691200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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