Variant report

Variant	rs6702441
Chromosome Location	chr1:160656603-160656604
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160655760..160657407-chr1:160694604..160697508,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11265464	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265465	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265466	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265467	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11265468	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265469	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580216	0.88[AMR][1000 genomes]
rs11584616	0.88[AMR][1000 genomes]
rs11589131	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117768	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124234	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12143827	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569009	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12730796	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34154650	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34219158	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35206837	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35474473	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3766369	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59265097	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9793380	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9793381	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9793987	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv437213	chr1:160652730-160681836	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160654000-160662800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:160654200-160657000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:160654200-160671000	Weak transcription	Small Intestine	intestine
4	chr1:160655200-160673600	Weak transcription	Spleen	Spleen
5	chr1:160655400-160661600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:160655600-160659400	Strong transcription	Fetal Thymus	thymus
7	chr1:160655800-160662200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:160655800-160662200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:160656000-160660400	Strong transcription	Primary B cells from cord blood	blood
10	chr1:160656200-160658400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:160656200-160659400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:160656200-160672000	Weak transcription	Dnd41	blood
13	chr1:160656400-160656800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:160656400-160657400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:160656400-160657400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:160656400-160657400	Weak transcription	GM12878-XiMat	blood
17	chr1:160656400-160657400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:160656400-160657800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:160656400-160658000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:160656400-160658200	Strong transcription	Primary B cells from peripheral blood	blood
21	chr1:160656400-160658200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:160656400-160658400	Strong transcription	Primary T cells from cord blood	blood
23	chr1:160656400-160658800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr1:160656400-160658800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:160656400-160659400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr1:160656400-160659400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr1:160656400-160659400	Weak transcription	Thymus	Thymus
28	chr1:160656600-160657000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr1:160656600-160657400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr1:160656600-160657800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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