Variant report

Variant	rs6703115
Chromosome Location	chr1:57960915-57960916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10493226	0.82[AFR][1000 genomes]
rs10493229	0.81[AFR][1000 genomes]
rs11207047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11207048	0.81[AFR][1000 genomes]
rs11207049	0.81[AFR][1000 genomes]
rs11207050	0.81[AFR][1000 genomes]
rs11207051	0.81[AFR][1000 genomes]
rs11803909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804717	0.82[AFR][1000 genomes]
rs11805586	0.81[AFR][1000 genomes]
rs11810273	0.81[AFR][1000 genomes]
rs12063470	0.81[AFR][1000 genomes]
rs12063594	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067444	0.81[AFR][1000 genomes]
rs12067490	0.81[AFR][1000 genomes]
rs12073810	0.81[AFR][1000 genomes]
rs12073879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4310463	0.81[AFR][1000 genomes]
rs4348747	0.81[AFR][1000 genomes]
rs4526638	0.81[AFR][1000 genomes]
rs4529731	0.81[AFR][1000 genomes]
rs4553222	0.81[AFR][1000 genomes]
rs5020303	1.00[AMR][1000 genomes]
rs56873272	0.81[AFR][1000 genomes]
rs58873103	0.81[AFR][1000 genomes]
rs59078890	0.82[AFR][1000 genomes]
rs6681889	0.82[AFR][1000 genomes]
rs6694496	0.82[AFR][1000 genomes]
rs6700225	0.82[AFR][1000 genomes]
rs947244	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57955200-57972800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57960600-57964600	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links