Variant report

Variant	rs670345
Chromosome Location	chr11:75446269-75446270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75437719..75439941-chr11:75444285..75446896,2	K562	blood:
2	chr11:75444653..75447401-chr11:75455301..75457066,2	MCF-7	breast:
3	chr11:75445518..75448042-chr11:75450594..75453068,2	MCF-7	breast:
4	chr11:75434732..75436829-chr11:75444022..75446867,2	K562	blood:
5	chr11:75443297..75446374-chr11:75458769..75461045,3	MCF-7	breast:
6	chr11:75444770..75447014-chr11:75448691..75450973,4	K562	blood:
7	chr11:75442509..75444846-chr11:75445963..75448004,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1236086	0.95[EUR][1000 genomes]
rs505990	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs556532	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs558464	0.92[EUR][1000 genomes]
rs683941	0.95[EUR][1000 genomes]
rs684004	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75443200-75446800	Enhancers	Liver	Liver
2	chr11:75443200-75448800	Enhancers	Fetal Intestine Large	intestine
3	chr11:75443400-75446800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:75443800-75446600	Enhancers	Lung	lung
5	chr11:75444000-75446800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:75444000-75446800	Enhancers	Right Ventricle	heart
7	chr11:75444000-75447000	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:75444200-75446400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:75444200-75446600	Enhancers	Colonic Mucosa	Colon
10	chr11:75444200-75446800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:75444200-75447000	Enhancers	Adipose Nuclei	Adipose
12	chr11:75444200-75447000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:75444400-75446800	Enhancers	Left Ventricle	heart
14	chr11:75444400-75446800	Enhancers	Right Atrium	heart
15	chr11:75444400-75447200	Enhancers	Fetal Heart	heart
16	chr11:75444600-75447400	Enhancers	Fetal Intestine Small	intestine
17	chr11:75445000-75447400	Enhancers	Fetal Thymus	thymus
18	chr11:75445200-75446800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr11:75445200-75455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:75445800-75446400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:75445800-75446400	Enhancers	Thymus	Thymus
22	chr11:75446000-75447000	Enhancers	Stomach Mucosa	stomach
23	chr11:75446000-75454200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:75446000-75454800	Weak transcription	Psoas Muscle	Psoas
25	chr11:75446200-75446400	Flanking Active TSS	HepG2	liver
26	chr11:75446200-75447200	Enhancers	Skeletal Muscle Male	skeletal muscle

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