Variant report

Variant	rs6705145
Chromosome Location	chr2:36842844-36842845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36826854..36828860-chr2:36842420..36843944,2	MCF-7	breast:
2	chr2:36824440..36826372-chr2:36842411..36844588,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171055	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17019813	1.00[TSI][hapmap]
rs17019853	1.00[TSI][hapmap]
rs2058682	1.00[TSI][hapmap]
rs2058683	1.00[TSI][hapmap]
rs56089319	0.90[AMR][1000 genomes]
rs59452863	0.90[AMR][1000 genomes]
rs6738054	0.81[AMR][1000 genomes]
rs73923038	1.00[AMR][1000 genomes]
rs73923042	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv2681	chr2:36822990-36848171	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36841200-36843000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:36841200-36843000	Enhancers	Osteobl	bone
3	chr2:36841200-36843200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:36841200-36844200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:36841200-36845200	Enhancers	Placenta	Placenta
6	chr2:36841400-36843200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:36841400-36843200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:36841400-36843800	Weak transcription	Fetal Lung	lung
9	chr2:36841400-36844000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:36841600-36844000	Weak transcription	Fetal Kidney	kidney
11	chr2:36841600-36844800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr2:36841600-36846600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:36842000-36843000	Enhancers	NHDF-Ad	bronchial
14	chr2:36842000-36843000	Enhancers	NHLF	lung
15	chr2:36842000-36843400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:36842200-36845200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr2:36842400-36843000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:36842600-36843000	Enhancers	Hela-S3	cervix
19	chr2:36842600-36843400	Enhancers	Adipose Nuclei	Adipose
20	chr2:36842600-36843600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:36842600-36844000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:36842600-36844000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:36842600-36845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:36842800-36843800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:36842800-36844000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:36842800-36844600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:36842800-36844800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:36842800-36847400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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