Variant report

Variant	rs6705692
Chromosome Location	chr2:62815912-62815913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:62815568..62818395-chr2:62989644..62992050,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1038570	0.90[GIH][hapmap];0.83[MEX][hapmap]
rs12987703	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12991078	0.91[EUR][1000 genomes]
rs12998264	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1386400	0.90[GIH][hapmap];0.82[MEX][hapmap]
rs1534418	0.81[YRI][hapmap]
rs1534419	0.84[YRI][hapmap]
rs1872789	0.87[YRI][hapmap]
rs2204655	0.87[YRI][hapmap]
rs35387085	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35499742	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs360786	0.84[ASW][hapmap]
rs360793	0.84[ASW][hapmap]
rs360794	0.84[ASW][hapmap]
rs360795	0.84[ASW][hapmap]
rs360806	0.84[ASW][hapmap]
rs6545968	0.81[YRI][hapmap]
rs6705835	0.87[YRI][hapmap]
rs6753095	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv834226	chr2:62745027-62894013	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv874232	chr2:62758044-62906084	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv834237	chr2:62762743-62926036	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6705692	XPO1	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62798600-62818400	Weak transcription	Esophagus	oesophagus
2	chr2:62813400-62819400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:62813600-62819200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:62814200-62818000	Enhancers	HepG2	liver
5	chr2:62814600-62818400	Enhancers	Brain Substantia Nigra	brain
6	chr2:62814800-62816200	Weak transcription	NHDF-Ad	bronchial
7	chr2:62814800-62817800	Enhancers	Brain Cingulate Gyrus	brain
8	chr2:62815000-62816000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:62815000-62816200	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:62815000-62816400	Weak transcription	Osteobl	bone
11	chr2:62815000-62816600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:62815000-62816800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:62815000-62822600	Weak transcription	NHLF	lung
14	chr2:62815200-62816200	Weak transcription	Brain Anterior Caudate	brain
15	chr2:62815200-62816400	Weak transcription	Brain Angular Gyrus	brain
16	chr2:62815200-62816800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:62815200-62816800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:62815200-62817000	Weak transcription	HSMMtube	muscle
19	chr2:62815200-62817200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:62815200-62822400	Weak transcription	Fetal Stomach	stomach
21	chr2:62815200-62822600	Weak transcription	NH-A	brain
22	chr2:62815400-62823000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:62815600-62818000	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links