Variant report

Variant	rs67057259
Chromosome Location	chr4:57958652-57958653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10002669	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013983	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573014	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573018	0.90[EUR][1000 genomes]
rs28405417	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34816319	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611988	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847938	1.00[ASN][1000 genomes]
rs71601676	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57942800-57960400	Weak transcription	Psoas Muscle	Psoas
2	chr4:57944400-57964000	Weak transcription	Fetal Thymus	thymus
3	chr4:57945200-57960400	Weak transcription	Pancreas	Pancrea
4	chr4:57948400-57965200	Weak transcription	Brain Anterior Caudate	brain
5	chr4:57948600-57960400	Weak transcription	HSMM	muscle
6	chr4:57950000-57960000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:57950000-57960400	Weak transcription	Right Atrium	heart
8	chr4:57950000-57963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:57950800-57960400	Weak transcription	NHLF	lung
10	chr4:57955400-57958800	Enhancers	HUVEC	blood vessel
11	chr4:57955800-57960400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:57956200-57960800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:57956200-57964000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:57956400-57960200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:57956400-57960400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:57956400-57960400	Weak transcription	Adipose Nuclei	Adipose
17	chr4:57956400-57965400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:57956600-57960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:57956600-57960600	Weak transcription	NHEK	skin
20	chr4:57956800-57974400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:57957000-57958800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:57957000-57960200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:57957000-57960400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:57957000-57960400	Weak transcription	Lung	lung
25	chr4:57957000-57974600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:57957200-57975200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:57957400-57967000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:57957600-57958800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:57957600-57958800	Enhancers	Colon Smooth Muscle	Colon
30	chr4:57957600-57960200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:57957800-57959000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:57957800-57959800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:57957800-57960200	Weak transcription	Ovary	ovary
34	chr4:57957800-57960400	Weak transcription	HMEC	breast
35	chr4:57958000-57959800	Weak transcription	Fetal Lung	lung
36	chr4:57958000-57960400	Weak transcription	HSMMtube	muscle
37	chr4:57958000-57962600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:57958000-57968200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:57958200-57960000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:57958200-57960200	Weak transcription	Right Ventricle	heart
41	chr4:57958200-57960200	Weak transcription	Osteobl	bone
42	chr4:57958200-57960400	Weak transcription	Left Ventricle	heart
43	chr4:57958200-57960400	Weak transcription	NH-A	brain
44	chr4:57958200-57960800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:57958200-57964600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr4:57958200-57965400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:57958200-57967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:57958200-57975200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:57958200-57975400	Weak transcription	Small Intestine	intestine
50	chr4:57958400-57959200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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