Variant report

Variant	rs6706121
Chromosome Location	chr2:128109884-128109885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10180087	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10928763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13385316	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2404837	1.00[AMR][1000 genomes]
rs4528712	1.00[AMR][1000 genomes]
rs6713268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6734775	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761123	1.00[AMR][1000 genomes]
rs7573489	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459771	chr2:128103479-128114160	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3459772	chr2:128103655-128114047	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
2	chr2:128072200-128111800	Weak transcription	K562	blood
3	chr2:128072600-128112000	Weak transcription	NHEK	skin
4	chr2:128077000-128116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
6	chr2:128079800-128114600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:128082000-128114600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:128083600-128117000	Weak transcription	Brain Anterior Caudate	brain
9	chr2:128086600-128112000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr2:128090800-128112000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:128092600-128122000	Weak transcription	Pancreas	Pancrea
12	chr2:128093200-128122800	Weak transcription	Fetal Kidney	kidney
13	chr2:128095600-128122000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:128096400-128112000	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:128096400-128122200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:128096800-128117800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr2:128096800-128119600	Weak transcription	HSMM	muscle
18	chr2:128100000-128112000	Weak transcription	Fetal Lung	lung
19	chr2:128100200-128110000	Weak transcription	Fetal Intestine Large	intestine
20	chr2:128100200-128119600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:128100400-128118400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:128100600-128119800	Weak transcription	NHDF-Ad	bronchial
23	chr2:128101600-128116400	Weak transcription	Fetal Thymus	thymus
24	chr2:128101600-128117800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr2:128102600-128122400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:128103800-128111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:128104600-128119400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:128105600-128127400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr2:128106400-128111800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:128106400-128111800	Weak transcription	A549	lung
31	chr2:128106400-128112200	Weak transcription	Dnd41	blood
32	chr2:128106400-128119200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr2:128106600-128111800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:128106600-128112000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:128106600-128112200	Weak transcription	Brain Substantia Nigra	brain
36	chr2:128107000-128112000	Weak transcription	Primary T cells from cord blood	blood
37	chr2:128107000-128122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr2:128107200-128122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr2:128107800-128119400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:128107800-128140200	Weak transcription	Gastric	stomach
41	chr2:128108000-128112000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr2:128108000-128117000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr2:128108600-128110000	Enhancers	Liver	Liver
44	chr2:128108800-128112200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr2:128109000-128110200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:128109000-128111800	Weak transcription	Adipose Nuclei	Adipose
47	chr2:128109000-128112000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr2:128109000-128112000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr2:128109200-128110200	Enhancers	HepG2	liver
50	chr2:128109200-128111800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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