Variant report

Variant	rs6706369
Chromosome Location	chr2:58503341-58503342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10172212	0.86[JPT][hapmap]
rs10490251	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12477242	0.94[JPT][hapmap]
rs12620940	0.81[JPT][hapmap]
rs17398913	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2043890	1.00[ASW][hapmap];0.87[JPT][hapmap];0.88[MKK][hapmap]
rs56394605	0.87[ASN][1000 genomes]
rs59187049	0.96[ASN][1000 genomes]
rs62141880	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62141882	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72618697	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs848287	1.00[ASW][hapmap];0.87[JPT][hapmap]
rs848288	0.94[JPT][hapmap];0.88[MKK][hapmap]
rs848289	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58500000-58510600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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