Variant report

Variant	rs6706623
Chromosome Location	chr2:234908947-234908948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11563054	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12474996	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12475044	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12476648	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12477019	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987842	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28901884	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28902234	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28902237	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28902242	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28903969	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3732213	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6710801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6719854	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6750653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6751169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234898600-234912400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:234903000-234912400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234903400-234909000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:234903600-234909200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:234904800-234911400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:234905000-234909400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:234905200-234909000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:234906000-234911400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr2:234906800-234909000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:234906800-234909200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:234906800-234912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:234907000-234909000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:234907200-234909400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr2:234908400-234912600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:234908600-234909000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:234908600-234909000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr2:234908600-234909600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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