Variant report

Variant	rs6707036
Chromosome Location	chr2:55287327-55287328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10496036	0.88[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap]
rs12464447	0.81[EUR][1000 genomes]
rs12471379	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12475787	0.85[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs12475904	0.82[EUR][1000 genomes]
rs17046570	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs17046594	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs17347089	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs17418675	0.85[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs55659423	0.80[EUR][1000 genomes]
rs55698303	0.81[EUR][1000 genomes]
rs55993793	0.81[EUR][1000 genomes]
rs56013263	0.84[EUR][1000 genomes]
rs6713756	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67156582	0.85[EUR][1000 genomes]
rs72795431	0.82[EUR][1000 genomes]
rs7582359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs887	0.93[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55278200-55288800	Weak transcription	Lung	lung
2	chr2:55278800-55288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:55278800-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:55279000-55290600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:55279400-55287600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:55279800-55287400	Weak transcription	HSMM	muscle
7	chr2:55280000-55289000	Weak transcription	HepG2	liver
8	chr2:55280200-55288200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:55281800-55287600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:55283600-55287600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:55287000-55287400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr2:55287000-55287400	Flanking Active TSS	K562	blood
13	chr2:55287200-55287600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:55287200-55287800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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