Variant report

Variant	rs6707701
Chromosome Location	chr2:86645539-86645540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11904506	1.00[AMR][1000 genomes]
rs12105337	1.00[AMR][1000 genomes]
rs56979390	1.00[AMR][1000 genomes]
rs57978399	1.00[AMR][1000 genomes]
rs58337574	1.00[AMR][1000 genomes]
rs59206006	1.00[AMR][1000 genomes]
rs59274254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6758280	1.00[AMR][1000 genomes]
rs72926423	1.00[AMR][1000 genomes]
rs7596624	1.00[AMR][1000 genomes]
rs7596866	1.00[AMR][1000 genomes]
rs7604799	1.00[AMR][1000 genomes]
rs9967845	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86641200-86645600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr2:86641400-86645600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:86643000-86648400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:86643600-86645600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:86644400-86645600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:86644800-86645600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:86644800-86645600	Enhancers	HMEC	breast
8	chr2:86644800-86645600	Enhancers	NHEK	skin
9	chr2:86644800-86645800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:86645000-86645600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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