Variant report

Variant	rs6708222
Chromosome Location	chr2:167945414-167945415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10207422	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12105375	1.00[CEU][hapmap]
rs4260212	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs60105601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742021	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7423376	0.91[GIH][hapmap];1.00[MEX][hapmap]
rs7565761	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]
rs7579077	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs7583143	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584072	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7592670	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7601938	1.00[JPT][hapmap]
rs7606603	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs7607326	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs998898	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6708222	KLRC2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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