Variant report

Variant	rs6708608
Chromosome Location	chr2:187179750-187179751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10172511	0.88[AMR][1000 genomes]
rs10188807	0.89[AMR][1000 genomes]
rs10189971	0.86[AMR][1000 genomes]
rs10193268	0.86[AMR][1000 genomes]
rs10194541	0.91[AMR][1000 genomes]
rs10194719	0.90[AMR][1000 genomes]
rs10196208	0.86[AMR][1000 genomes]
rs10201768	0.87[AMR][1000 genomes]
rs10201874	0.86[AMR][1000 genomes]
rs10203879	0.87[AMR][1000 genomes]
rs10205506	0.86[AMR][1000 genomes]
rs10205705	0.85[AMR][1000 genomes]
rs10210844	0.81[AMR][1000 genomes]
rs1026118	0.86[AMR][1000 genomes]
rs10931239	0.86[AMR][1000 genomes]
rs10931242	0.86[AMR][1000 genomes]
rs11676936	0.85[AMR][1000 genomes]
rs11683595	0.85[AMR][1000 genomes]
rs11693737	0.85[AMR][1000 genomes]
rs11884786	0.86[AMR][1000 genomes]
rs11889909	0.86[AMR][1000 genomes]
rs12052331	0.85[AMR][1000 genomes]
rs12053380	0.85[AMR][1000 genomes]
rs12463831	0.88[AMR][1000 genomes]
rs12473542	0.88[AMR][1000 genomes]
rs12475522	0.86[AMR][1000 genomes]
rs12477683	0.88[AMR][1000 genomes]
rs12611673	0.82[AMR][1000 genomes]
rs12615503	0.87[AMR][1000 genomes]
rs12619990	0.88[AMR][1000 genomes]
rs12620626	0.84[AMR][1000 genomes]
rs12693440	0.90[AMR][1000 genomes]
rs12693444	0.90[AMR][1000 genomes]
rs12693447	0.84[AMR][1000 genomes]
rs12693448	0.86[AMR][1000 genomes]
rs12693449	0.86[AMR][1000 genomes]
rs13027135	0.88[AMR][1000 genomes]
rs1349154	0.86[AMR][1000 genomes]
rs1375321	0.86[AMR][1000 genomes]
rs1375324	0.88[AMR][1000 genomes]
rs1375325	0.88[AMR][1000 genomes]
rs1375327	0.88[AMR][1000 genomes]
rs1375328	0.88[AMR][1000 genomes]
rs1448851	0.86[AMR][1000 genomes]
rs1448852	0.86[AMR][1000 genomes]
rs1448854	0.85[AMR][1000 genomes]
rs1448860	0.86[AMR][1000 genomes]
rs1448861	0.86[AMR][1000 genomes]
rs1448863	0.81[AMR][1000 genomes]
rs1562646	0.86[AMR][1000 genomes]
rs1562647	0.84[AMR][1000 genomes]
rs1839193	0.81[AMR][1000 genomes]
rs1900835	0.86[AMR][1000 genomes]
rs1992930	0.82[AMR][1000 genomes]
rs2197816	0.85[AMR][1000 genomes]
rs2370691	0.86[AMR][1000 genomes]
rs2370692	0.86[AMR][1000 genomes]
rs34229945	0.81[AMR][1000 genomes]
rs4130801	0.81[AMR][1000 genomes]
rs4144824	0.82[AMR][1000 genomes]
rs4666701	0.86[AMR][1000 genomes]
rs4667079	0.88[AMR][1000 genomes]
rs4667080	0.86[AMR][1000 genomes]
rs4667081	0.86[AMR][1000 genomes]
rs4667086	0.86[AMR][1000 genomes]
rs4667089	0.82[AMR][1000 genomes]
rs5008098	0.82[AMR][1000 genomes]
rs56393956	0.84[AMR][1000 genomes]
rs56718299	0.88[AMR][1000 genomes]
rs56786415	0.87[AMR][1000 genomes]
rs57289110	0.88[AMR][1000 genomes]
rs58244659	0.88[AMR][1000 genomes]
rs58488407	0.85[AMR][1000 genomes]
rs58579412	0.84[AMR][1000 genomes]
rs59087873	0.88[AMR][1000 genomes]
rs59224241	0.88[AMR][1000 genomes]
rs59360834	0.84[AMR][1000 genomes]
rs60859807	0.88[AMR][1000 genomes]
rs61253791	0.88[AMR][1000 genomes]
rs6434170	0.88[AMR][1000 genomes]
rs6434171	0.86[AMR][1000 genomes]
rs66593320	0.88[AMR][1000 genomes]
rs6717965	0.88[AMR][1000 genomes]
rs6728734	0.88[AMR][1000 genomes]
rs6741525	0.84[AMR][1000 genomes]
rs6745187	0.82[AMR][1000 genomes]
rs6745873	0.88[AMR][1000 genomes]
rs6752407	0.82[AMR][1000 genomes]
rs6754898	0.84[AMR][1000 genomes]
rs6755955	0.88[AMR][1000 genomes]
rs6759502	0.82[AMR][1000 genomes]
rs6760230	0.82[AMR][1000 genomes]
rs67917059	0.84[AMR][1000 genomes]
rs716130	0.88[AMR][1000 genomes]
rs72907565	0.88[AMR][1000 genomes]
rs73035230	0.81[AMR][1000 genomes]
rs73035235	0.84[AMR][1000 genomes]
rs73035261	0.88[AMR][1000 genomes]
rs7558599	0.86[AMR][1000 genomes]
rs7571191	0.84[AMR][1000 genomes]
rs7586291	0.82[AMR][1000 genomes]
rs7586995	0.83[AMR][1000 genomes]
rs7587077	0.84[AMR][1000 genomes]
rs7587079	0.84[AMR][1000 genomes]
rs7602918	0.88[AMR][1000 genomes]
rs7606494	0.86[AMR][1000 genomes]
rs980540	0.86[AMR][1000 genomes]
rs9807987	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv428067	chr2:187171324-187334779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187173200-187192200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:187173600-187190000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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