Variant report

Variant	rs67086923
Chromosome Location	chr3:51323511-51323512
allele	GC/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12635282	0.81[ASN][1000 genomes]
rs1383252	0.81[ASN][1000 genomes]
rs1480355	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1480357	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1480358	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1480363	0.81[ASN][1000 genomes]
rs1480365	0.81[ASN][1000 genomes]
rs1552072	0.86[ASN][1000 genomes]
rs1552073	0.86[ASN][1000 genomes]
rs1904786	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2061951	0.81[ASN][1000 genomes]
rs2355941	0.81[ASN][1000 genomes]
rs2355942	0.81[ASN][1000 genomes]
rs2883811	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34035394	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34251985	0.86[ASN][1000 genomes]
rs4974093	0.80[ASN][1000 genomes]
rs4974095	0.81[ASN][1000 genomes]
rs4974097	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974109	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6782946	0.86[ASN][1000 genomes]
rs6800805	0.81[ASN][1000 genomes]
rs7634514	0.81[ASN][1000 genomes]
rs922612	0.81[ASN][1000 genomes]
rs9683267	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9825454	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9855442	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9855454	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9860962	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9878100	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51313000-51323800	Weak transcription	Fetal Brain Male	brain
2	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:51318200-51328600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:51318600-51324400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:51319600-51324000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:51319600-51324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:51319800-51323800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:51320000-51324200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:51321000-51324400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:51321000-51324600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:51321400-51323800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:51322600-51324600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:51322600-51329000	Weak transcription	Brain Angular Gyrus	brain
14	chr3:51322800-51323800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:51322800-51327800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:51323000-51325800	Weak transcription	Brain Germinal Matrix	brain
17	chr3:51323400-51323800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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