The 2.0 version of rSNPBase

Variant report

Variant rs6708961
Chromosome Location chr2:179255581-179255582
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179201800-179268200 Weak transcription HSMM muscle
2 chr2:179210800-179257200 Weak transcription Pancreas Pancrea
3 chr2:179225000-179257800 Weak transcription Lung lung
4 chr2:179226600-179257200 Weak transcription Gastric stomach
5 chr2:179240000-179258200 Weak transcription NHEK skin
6 chr2:179240200-179256800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr2:179241800-179262600 Weak transcription Stomach Smooth Muscle stomach
8 chr2:179242200-179258600 Weak transcription Brain Germinal Matrix brain
9 chr2:179246000-179256200 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr2:179246600-179257200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr2:179248200-179257200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr2:179249000-179262600 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr2:179249000-179269000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr2:179249400-179259400 Weak transcription Left Ventricle heart
15 chr2:179249600-179259800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr2:179249600-179264000 Weak transcription Aorta Aorta
17 chr2:179250800-179266000 Weak transcription K562 blood
18 chr2:179251000-179268600 Weak transcription NH-A brain
19 chr2:179252000-179261000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr2:179252200-179257000 Weak transcription Muscle Satellite Cultured Cells --
21 chr2:179252200-179257000 Weak transcription Osteobl bone
22 chr2:179252200-179264200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr2:179252400-179259000 Weak transcription Fetal Intestine Small intestine
24 chr2:179252400-179262000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr2:179252600-179256000 Strong transcription Cortex derived primary cultured neurospheres brain
26 chr2:179253000-179255800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr2:179253000-179256200 Strong transcription Skeletal Muscle Female skeletal muscle
28 chr2:179253200-179256200 Strong transcription HMEC breast
29 chr2:179253200-179269200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:179253400-179255800 Weak transcription Esophagus oesophagus
31 chr2:179253600-179262800 Weak transcription Liver Liver
32 chr2:179253600-179266000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr2:179254000-179255800 Weak transcription Brain Hippocampus Middle brain
34 chr2:179254400-179257000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr2:179254600-179262000 Weak transcription Brain Anterior Caudate brain
36 chr2:179254600-179262000 Weak transcription Brain Inferior Temporal Lobe brain
37 chr2:179254800-179256000 Strong transcription Fetal Muscle Trunk muscle
38 chr2:179255000-179269200 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr2:179255200-179257000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr2:179255200-179262200 Weak transcription HSMMtube muscle
41 chr2:179255400-179257400 Weak transcription Fetal Muscle Leg muscle
42 chr2:179255400-179261200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr2:179255400-179262200 Weak transcription Fetal Brain Female brain
44 chr2:179255400-179265000 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015